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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 297ChIP-seq
  • 90ATAC-seq
  • 6total RNA-seq
  • 1WGBS
  • 1pCHi-C
Assay category
  • 297DNA binding
  • 90DNA accessibility
  • 6Transcription
  • 1DNA methylation
Target of assay
  • 286control
  • 6histone
  • 6histone modification
  • 5transcription factor
  • 4broad histone mark
  • 3RNA binding protein
  • 2narrow histone mark
  • 1recombinant protein
Date released
  • 59November, 2017
  • 47October, 2019
  • 30August, 2017
  • 29October, 2018
  • 28November, 2019
  • 24May, 2022
  • 23May, 2019
  • 23May, 2020
  • 22December, 2017
  • 21February, 2021
  • 18August, 2021
  • 15April, 2019
  • 14May, 2021
  • 8February, 2018
  • 8June, 2019
  • 7November, 2018
  • 6September, 2017
  • 4December, 2018
  • 4January, 2019
  • 2October, 2017
  • 1July, 2019
  • 1March, 2019
  • 1November, 2020
Available data
  • 3392bam
  • bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 394Homo sapiens
Biosample type
  • 223tissue
  • 78cell line
  • 48in vitro differentiated cells
  • 45primary cell
  • 1stem cell
Organ
  • 94liver
  • 88pancreas
  • 32blood vessel
  • 32vasculature
  • 31connective tissue
  • 30epithelium
  • 28heart
  • 25brain
  • 23limb
  • 20adipose tissue
  • 17artery
  • 13kidney
  • 11nerve
  • 8bone element
  • 8embryo
  • 8skeleton
  • 8spleen
  • 6blood
  • 6bodily fluid
  • 5vein
  • 3musculature of body
  • 1eye
Project
  • 395AMP
Genome assembly (visualization)
  • 99hg19
  • 81GRCh38
Lab
  • 370AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 23inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 2missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

395 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
tissue
islet of Langerhans7386
liver40
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG2471
smooth muscle cell of the coronary artery28
Panc17
GM128786
EndoC_BH121
in vitro differentiated cells
neural progenitor cell710
adipocyte6
pancreatic endoderm6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
Hepatic endoderm2
primary cell
monocyte13
pancreatic alpha cell6
pancreatic beta cell6
endothelial cell of umbilical vein5
cardiac fibroblast2
stem cell
hESC1
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