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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1137total RNA-seq
  • 723ChIP-seq
  • 197DNase-seq
  • 125ATAC-seq
  • 18small RNA-seq
  • 9WGBS
  • 8single cell RNA-seq
  • 3FAIRE-seq
  • 1pCHi-C
Assay category
  • 1163Transcription
  • 723DNA binding
  • 325DNA accessibility
  • 9DNA methylation
Target of assay
  • 556histone
  • 556histone modification
  • 295narrow histone mark
  • 261broad histone mark
  • 138control
  • 32transcription factor
  • 14RNA binding protein
  • 7recombinant protein
Date released
  • 572February, 2021
  • 283May, 2020
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 120May, 2019
  • 114July, 2018
  • 82July, 2019
  • 79April, 2019
  • 69November, 2017
  • 59November, 2019
  • 49August, 2021
  • 16March, 2020
  • 16October, 2018
  • 6November, 2020
  • 5April, 2018
  • 5December, 2019
  • 1August, 2017
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2221Homo sapiens
Biosample type
  • 1537tissue
  • 372primary cell
  • 157cell line
  • 155in vitro differentiated cells
Organ
  • 494connective tissue
  • 400adipose tissue
  • 288pancreas
  • 223brain
  • 220liver
  • 211heart
  • 179vasculature
  • 177blood vessel
  • 144kidney
  • 129epithelium
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 42nerve
  • 20vein
  • 18ureter
  • 10embryo
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2035AMP
  • 186T1D
Genome assembly (visualization)
  • 2019GRCh38
  • 1995hg19
Lab
  • 2041AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
Audit category:
  • 201inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2221 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue381
liver147551
islet of Langerhans169219
bone tissue58
heart left ventricle334322
primary cell
monocyte538415
endothelial cell of umbilical vein1721
epithelial cell of proximal tubule1101
hepatocyte541
skeletal muscle satellite cell181
cell line
smooth muscle cell of the coronary artery5268
EndoC_BH133151
Panc1131
H1-hESC8
RCC 7860 HIF1a re-expression14
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell72010
cardiac precursors (cardiac muscle cell)191
induced pluripotent stem cell9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
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