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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
11
ATAC-seq
6
DNase-seq
2
WGBS
Assay category
79
DNA binding
17
DNA accessibility
2
DNA methylation
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
26
October, 2019
14
February, 2021
4
July, 2019
4
June, 2019
Available data
155
bam
128
bigWig
113
bed narrowPeak
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
98
Homo sapiens
Biosample type
83
tissue
14
cell line
1
primary cell
Organ
466
liver
276
pancreas
229
brain
epithelium
141
heart
132
kidney
127
vasculature
122
blood vessel
118
connective tissue
110
limb
51
musculature of body
48
artery
45
blood
45
bodily fluid
43
adipose tissue
38
nerve
22
embryo
20
vein
18
ureter
15
spleen
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
98
AMP
Genome assembly (visualization)
79
GRCh38
78
hg19
Lab
98
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
month_released!
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
2
coronary artery
5
1
2
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
smooth muscle cell of the brain vasculature
1
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