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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
36
DNase-seq
8
ATAC-seq
1
WGBS
Assay category
125
DNA binding
44
DNA accessibility
1
DNA methylation
Target of assay
51
transcription factor
49
histone
49
histone modification
34
broad histone mark
23
control
15
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
64
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
7
May, 2019
6
February, 2021
1
July, 2019
Available data
174
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
170
Homo sapiens
Biosample type
110
tissue
60
cell line
Organ
519
liver
283
pancreas
231
brain
171
epithelium
141
heart
132
kidney
127
vasculature
122
blood vessel
connective tissue
110
limb
60
blood
60
bodily fluid
51
musculature of body
48
artery
44
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
170
AMP
Genome assembly (visualization)
146
GRCh38
146
hg19
Lab
170
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
files.file_type!
tsv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
distal epiphysis of femur
1
+ See 7 more…
cell line
GM12878
60
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