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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
30
DNase-seq
12
ATAC-seq
6
WGBS
Assay category
87
DNA binding
42
DNA accessibility
6
DNA methylation
Target of assay
61
histone
61
histone modification
37
broad histone mark
24
narrow histone mark
20
control
12
transcription factor
RNA binding protein
Date released
53
April, 2019
34
June, 2019
19
May, 2019
14
February, 2021
10
July, 2019
5
October, 2019
Available data
213
bigWig
205
bam
180
bed narrowPeak
tsv
88
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
135
Homo sapiens
Biosample type
114
tissue
14
cell line
7
primary cell
Organ
462
liver
274
pancreas
228
brain
163
epithelium
135
heart
129
kidney
122
vasculature
118
blood vessel
110
limb
109
connective tissue
51
musculature of body
50
blood
50
bodily fluid
47
artery
39
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
135
AMP
Genome assembly (visualization)
115
GRCh38
106
hg19
Lab
135
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
tissue
heart left ventricle
31
3
2
2
heart
14
18
1
heart right ventricle
13
1
2
right atrium auricular region
9
2
1
coronary artery
4
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
4
3
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