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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 18WGBS
  • 6total RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 389DNA accessibility
  • 18DNA methylation
  • 6Transcription
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 303control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 392November, 2017
  • 234October, 2019
  • 218June, 2019
  • 193August, 2017
  • 120May, 2019
  • 104May, 2021
  • 95May, 2020
  • 94December, 2017
  • 87November, 2018
  • 79April, 2019
  • 74October, 2018
  • 46September, 2018
  • 39November, 2019
  • 34August, 2021
  • 34December, 2018
  • 27February, 2021
  • 25January, 2019
  • 24February, 2018
  • 24May, 2022
  • 17July, 2019
  • 15October, 2017
  • 11September, 2017
  • 3March, 2020
  • 2November, 2020
  • 1March, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1985Homo sapiens
Biosample type
  • 990tissue
  • 478cell line
  • 357primary cell
  • 164in vitro differentiated cells
  • 3stem cell
Organ
  • 519liver
  • 283pancreas
  • 231brain
  • 171epithelium
  • 141heart
  • 132kidney
  • 127vasculature
  • 122blood vessel
  • 119connective tissue
  • 110limb
  • 60blood
  • 60bodily fluid
  • 51musculature of body
  • 48artery
  • 44adipose tissue
  • 38nerve
  • 24spleen
  • 22embryo
  • 20vein
  • 18ureter
  • 8bone element
  • 8skeleton
  • 7eye
  • 1pituitary gland
Project
  • 1904AMP
  • 88T1D
Genome assembly (visualization)
  • 1598hg19
  • 1559GRCh38
Lab
  • 1883AMP-T2D consortium
  • 108Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 78inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

1992 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
FAIRE-seq
pCHi-C
tissue
liver1222
islet of Langerhans3013861
body of pancreas35442
heart left ventricle34322
kidney27131
cell line
HepG235911
GM1287860
EndoC_BH1151
Panc1131
smooth muscle cell of the coronary artery68
primary cell
monocyte8415
pancreatic endocrine cell23
endothelial cell of umbilical vein1721
pancreatic beta cell137
pancreatic alpha cell136
in vitro differentiated cells
adipocyte531
neural progenitor cell2010
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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