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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
150
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
control
8
RNA binding protein
3
chromatin remodeller
Date released
569
February, 2021
321
November, 2017
276
May, 2021
260
May, 2020
251
August, 2017
211
October, 2019
210
June, 2019
164
July, 2018
97
May, 2019
81
November, 2018
79
July, 2019
73
December, 2017
72
September, 2018
65
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
41
August, 2021
31
February, 2018
30
December, 2018
26
January, 2019
18
May, 2022
16
March, 2020
13
October, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
1
March, 2019
Available data
271
bigWig
256
fastq
251
bam
142
bed narrowPeak
89
tsv
74
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
31
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
245
Homo sapiens
Biosample type
158
tissue
48
in vitro differentiated cells
45
primary cell
Organ
153
pancreas
64
connective tissue
18
liver
17
epithelium
16
adipose tissue
Project
251
AMP
Genome assembly (visualization)
249
hg19
247
GRCh38
Lab
251
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
txt
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
251 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
21
89
1
1
liver
17
pancreas
12
white adipose tissue
12
adipose tissue
1
2
+ See 2 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
14
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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