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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
15
total RNA-seq
Assay category
22
DNA binding
15
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
July, 2019
Available data
37
bam
30
bigWig
27
fastq
15
tsv
14
bed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
28
in vitro differentiated cells
8
cell line
1
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
37
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
37
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
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