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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
433
ChIP-seq
159
total RNA-seq
9
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
433
DNA binding
162
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
327
transcription factor
102
control
82
recombinant protein
81
histone modification
histone
58
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
299
November, 2017
166
May, 2020
53
November, 2018
46
December, 2017
14
August, 2017
8
July, 2019
8
June, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
October, 2019
1
August, 2021
1
March, 2020
Available data
608
bam
545
bigWig
421
fastq
393
bed narrowPeak
328
bigBed narrowPeak
179
tsv
53
bed broadPeak
53
bigBed broadPeak
28
tagAlign
14
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
610
Homo sapiens
Biosample type
352
cell line
242
tissue
13
primary cell
3
in vitro differentiated cells
Organ
604
liver
566
connective tissue
553
pancreas
441
adipose tissue
226
epithelium
150
heart
116
vasculature
114
kidney
112
blood vessel
82
artery
80
brain
66
bone element
66
limb
59
blood
59
bodily fluid
44
musculature of body
24
embryo
18
nerve
18
spleen
18
ureter
8
skeleton
6
eye
5
vein
1
pericardium
Project
610
AMP
Genome assembly (visualization)
513
hg19
467
GRCh38
Lab
610
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
610 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
WGBS
pCHi-C
cell line
HepG2
344
5
1
1
1
tissue
liver
78
147
2
1
right lobe of liver
5
2
1
1
2
retina
3
primary cell
hepatocyte
1
5
1
retinal pigment epithelial cell
2
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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