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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
442
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
WGBS
Assay category
442
DNA binding
162
Transcription
28
DNA accessibility
1
DNA methylation
Target of assay
337
transcription factor
101
control
83
histone modification
82
histone
recombinant protein
58
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
248
November, 2017
193
May, 2020
63
December, 2017
37
November, 2018
26
August, 2017
20
May, 2022
18
August, 2021
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
February, 2021
1
March, 2020
Available data
599
bam
541
bigWig
383
fastq
360
bed narrowPeak
277
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
633
Homo sapiens
Biosample type
308
tissue
298
cell line
15
in vitro differentiated cells
12
primary cell
Organ
691
pancreas
633
liver
596
connective tissue
443
adipose tissue
329
epithelium
287
heart
235
brain
220
vasculature
215
blood vessel
201
kidney
137
artery
114
limb
70
musculature of body
66
bone element
60
blood
60
bodily fluid
42
nerve
36
embryo
34
eye
23
spleen
20
vein
18
ureter
8
skeleton
1
pericardium
1
pituitary gland
Project
633
AMP
Genome assembly (visualization)
541
hg19
450
GRCh38
Lab
599
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2017
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
633 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
tissue
liver
122
147
20
2
1
right lobe of liver
10
2
1
1
2
cell line
HepG2
291
5
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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