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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
194
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
117
histone modification
116
histone
58
narrow histone mark
57
broad histone mark
47
transcription factor
30
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
393
November, 2017
307
May, 2021
295
August, 2017
283
May, 2020
250
October, 2019
218
June, 2019
164
July, 2018
129
August, 2021
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
80
April, 2019
76
October, 2018
72
September, 2018
65
February, 2023
59
November, 2019
49
April, 2018
44
May, 2022
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
280
fastq
275
bam
266
bigWig
136
bed narrowPeak
89
tsv
78
tagAlign
36
bigBed narrowPeak
35
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
295
Homo sapiens
Biosample type
183
tissue
58
primary cell
54
in vitro differentiated cells
Organ
167
pancreas
72
connective tissue
29
epithelium
26
liver
18
adipose tissue
13
musculature of body
Project
295
AMP
Genome assembly (visualization)
266
hg19
243
GRCh38
Lab
295
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
January, 2018
BIOSAMPLE
ASSAY
295 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
28
89
1
1
liver
25
skeletal muscle tissue
13
white adipose tissue
12
pancreas
7
+ See 4 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
1
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