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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
89
total RNA-seq
4
DNase-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
155
DNA binding
89
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
89
histone modification
88
histone
47
transcription factor
44
narrow histone mark
43
broad histone mark
19
control
8
RNA binding protein
3
chromatin remodeller
Date released
546
February, 2021
386
November, 2017
283
May, 2020
267
May, 2021
253
August, 2017
218
October, 2019
198
June, 2019
131
July, 2018
115
May, 2019
87
November, 2018
79
April, 2019
77
July, 2019
75
December, 2017
74
October, 2018
45
August, 2021
44
November, 2019
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
April, 2018
15
October, 2017
13
March, 2020
11
September, 2018
6
November, 2020
6
September, 2017
2
June, 2018
1
March, 2019
Available data
258
fastq
255
bigWig
253
bam
125
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
246
Homo sapiens
Biosample type
170
tissue
54
in vitro differentiated cells
29
primary cell
Organ
168
pancreas
71
connective tissue
epithelium
26
liver
17
adipose tissue
Project
253
AMP
Genome assembly (visualization)
235
hg19
232
GRCh38
Lab
253
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
April, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
253 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
pancreas
14
white adipose tissue
12
adipose tissue
2
2
+ See 2 more…
in vitro differentiated cells
adipocyte
53
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
See all biosamples
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