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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
total RNA-seq
133
ChIP-seq
42
ATAC-seq
14
single cell RNA-seq
6
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
285
Transcription
133
DNA binding
49
DNA accessibility
Target of assay
89
histone
89
histone modification
48
broad histone mark
41
narrow histone mark
27
control
17
transcription factor
8
RNA binding protein
Date released
139
August, 2017
122
July, 2018
51
October, 2018
38
November, 2019
36
May, 2021
24
May, 2022
14
October, 2019
11
September, 2018
8
April, 2018
November, 2018
6
September, 2017
4
July, 2019
4
June, 2019
4
October, 2017
3
March, 2020
2
May, 2019
1
March, 2019
Available data
467
bam
405
bigWig
283
tsv
236
fastq
138
bed narrowPeak
66
bigBed narrowPeak
27
bed bed3+
19
bed broadPeak
16
tagAlign
6
txt
5
bigBed broadPeak
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
460
Homo sapiens
Biosample type
422
tissue
31
primary cell
14
cell line
Organ
682
pancreas
628
liver
595
connective tissue
442
adipose tissue
epithelium
241
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
57
musculature of body
45
blood
45
bodily fluid
42
nerve
36
embryo
20
vein
18
ureter
15
spleen
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
465
AMP
2
T1D
Genome assembly (visualization)
432
hg19
415
GRCh38
Lab
442
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
467 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
small RNA-seq
FAIRE-seq
tissue
islet of Langerhans
266
30
38
6
1
1
body of pancreas
2
35
4
2
2
pancreas
1
16
2
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
cell line
Panc1
13
1
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