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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
38
ChIP-seq
20
DNase-seq
5
ATAC-seq
3
small RNA-seq
2
WGBS
Assay category
398
Transcription
38
DNA binding
25
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
23
October, 2018
19
June, 2019
18
August, 2017
12
July, 2019
1
January, 2018
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
460
bam
443
bigWig
401
tsv
44
fastq
31
bed narrowPeak
28
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
20
bigBed broadPeak
8
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
463
Homo sapiens
Biosample type
461
tissue
2
primary cell
Organ
715
liver
711
pancreas
600
connective tissue
445
adipose tissue
331
epithelium
252
heart
247
brain
187
vasculature
182
blood vessel
144
kidney
114
limb
102
artery
71
musculature of body
66
bone element
61
blood
61
bodily fluid
42
nerve
37
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
463
AMP
Genome assembly (visualization)
442
hg19
441
GRCh38
Lab
463
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
463 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
2
2
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
2
1
1
white adipose tissue
12
renal pelvis
10
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primary cell
mesenchymal stem cell of adipose
1
1
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