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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
136
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
167
histone
167
histone modification
106
narrow histone mark
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
80
October, 2019
41
November, 2017
30
June, 2019
16
July, 2019
13
May, 2019
4
October, 2017
2
November, 2018
Available data
182
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
186
Homo sapiens
Biosample type
166
tissue
20
primary cell
Organ
686
liver
637
pancreas
585
connective tissue
445
adipose tissue
287
epithelium
195
heart
186
brain
142
vasculature
137
blood vessel
129
kidney
88
artery
80
limb
66
bone element
blood
61
bodily fluid
55
musculature of body
33
embryo
26
nerve
20
spleen
18
ureter
11
vein
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
186
AMP
Genome assembly (visualization)
154
GRCh38
134
hg19
Lab
186
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
blood
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
5
14
1
layer of hippocampus
10
temporal lobe
7
1
1
angular gyrus
8
caudate nucleus
6
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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