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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
total RNA-seq
51
ATAC-seq
50
ChIP-seq
18
small RNA-seq
9
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
253
Transcription
53
DNA accessibility
50
DNA binding
9
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
275
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
87
November, 2018
82
July, 2019
81
December, 2017
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
41
August, 2021
34
December, 2018
30
January, 2019
26
February, 2018
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
October, 2022
1
March, 2019
Available data
365
bam
345
bigWig
254
tsv
50
tagAlign
34
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
0
cool
Organism
365
Homo sapiens
Biosample type
257
tissue
108
primary cell
Organ
200
liver
21
heart
16
connective tissue
13
brain
12
adipose tissue
9
blood vessel
9
vasculature
7
kidney
5
epithelium
5
musculature of body
4
pancreas
3
artery
1
limb
1
pericardium
Project
320
AMP
45
T1D
Genome assembly (visualization)
332
hg19
286
GRCh38
Lab
320
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
organ_slims!
embryo
BIOSAMPLE
ASSAY
365 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
liver
145
50
1
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 21 more…
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 35 more…
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