Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
102
DNA binding
12
Transcription
2
DNA accessibility
Target of assay
75
histone
75
histone modification
72
narrow histone mark
30
control
3
broad histone mark
Date released
83
October, 2019
15
November, 2017
12
July, 2019
3
May, 2019
3
October, 2017
Available data
243
bam
222
bigWig
203
bed narrowPeak
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
0
csv
Organism
116
Homo sapiens
Biosample type
110
tissue
6
primary cell
Organ
598
pancreas
568
connective tissue
433
adipose tissue
324
liver
241
epithelium
117
heart
116
brain
102
vasculature
101
blood vessel
77
artery
66
bone element
45
kidney
36
embryo
30
limb
16
nerve
11
spleen
10
musculature of body
8
skeleton
7
vein
6
blood
6
bodily fluid
1
eye
1
pericardium
1
pituitary gland
Project
116
AMP
Genome assembly (visualization)
90
hg19
89
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
116 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
7
1
cerebellum (Hemisphere)
3
1
1
layer of hippocampus
4
superior frontal gyrus
4
temporal lobe
2
1
1
+ See 65 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
Download