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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
511
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
2
WGBS
1
Hi-C
1
RRBS
Assay category
511
DNA binding
162
Transcription
8
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
57
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
28
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
December, 2018
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
685
Homo sapiens
Biosample type
368
cell line
290
tissue
15
in vitro differentiated cells
12
primary cell
Organ
759
pancreas
685
liver
595
connective tissue
adipose tissue
386
epithelium
244
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
59
musculature of body
42
nerve
37
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
685
AMP
Genome assembly (visualization)
586
hg19
531
GRCh38
Lab
685
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
adipose tissue
organ_slims!!
adipose tissue
BIOSAMPLE
ASSAY
685 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
Hi-C
RRBS
cell line
HepG2
360
5
1
1
1
tissue
liver
122
147
2
1
1
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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