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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
454
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
2
WGBS
1
Hi-C
1
RRBS
Assay category
454
DNA binding
162
Transcription
8
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
327
transcription factor
101
control
82
recombinant protein
80
histone modification
79
histone
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
193
May, 2020
59
December, 2017
34
November, 2018
28
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
December, 2018
1
February, 2021
1
March, 2020
Available data
624
bam
566
bigWig
408
fastq
385
bed narrowPeak
303
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
628
Homo sapiens
Biosample type
315
cell line
288
tissue
13
in vitro differentiated cells
12
primary cell
Organ
750
pancreas
628
liver
585
connective tissue
adipose tissue
378
epithelium
241
brain
205
heart
180
vasculature
176
blood vessel
141
kidney
114
limb
101
artery
66
bone element
59
musculature of body
50
blood
50
bodily fluid
42
nerve
37
embryo
24
spleen
20
vein
18
ureter
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
628
AMP
Genome assembly (visualization)
532
hg19
480
GRCh38
Lab
628
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
organ_slims!
adipose tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
628 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
Hi-C
RRBS
cell line
HepG2
307
5
1
1
1
tissue
liver
121
147
2
1
1
1
right lobe of liver
9
2
1
1
2
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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