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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
527
ChIP-seq
159
total RNA-seq
7
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
FAIRE-seq
1
Hi-C
1
WGBS
Assay category
527
DNA binding
162
Transcription
11
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
326
transcription factor
103
control
95
histone modification
94
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
38
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
27
October, 2019
26
August, 2017
8
July, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
701
bam
637
bigWig
465
fastq
454
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
15
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
702
Homo sapiens
Biosample type
366
cell line
288
tissue
33
primary cell
15
in vitro differentiated cells
Organ
684
pancreas
682
liver
594
connective tissue
442
adipose tissue
319
epithelium
246
brain
211
heart
187
vasculature
182
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
702
AMP
Genome assembly (visualization)
601
hg19
543
GRCh38
Lab
702
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
txt
BIOSAMPLE
ASSAY
702 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
FAIRE-seq
Hi-C
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
primary cell
endothelial cell of umbilical vein
17
2
1
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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