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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
4
total RNA-seq
2
Hi-C
2
small RNA-seq
1
WGBS
Assay category
33
DNA accessibility
17
DNA binding
6
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
7
May, 2019
5
July, 2019
4
March, 2020
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
59
Homo sapiens
Biosample type
46
tissue
13
primary cell
Organ
696
pancreas
601
liver
593
connective tissue
442
adipose tissue
323
epithelium
243
brain
214
heart
188
vasculature
183
blood vessel
138
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
59
musculature of body
42
nerve
36
embryo
24
spleen
22
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
59
AMP
Genome assembly (visualization)
55
hg19
53
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
59 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
psoas muscle
2
2
skeletal muscle tissue
1
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
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