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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1451ChIP-seq
  • 1273total RNA-seq
  • 208DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1451DNA binding
  • 1397Transcription
  • 388DNA accessibility
  • 18DNA methylation
Target of assay
  • 738histone modification
  • 737histone
  • 434transcription factor
  • 382narrow histone mark
  • 354broad histone mark
  • 277control
  • 96RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 572February, 2021
  • 334November, 2017
  • 283May, 2020
  • 277May, 2021
  • 250October, 2019
  • 243August, 2017
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 91December, 2017
  • 85November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 34December, 2018
  • 29January, 2019
  • 24May, 2022
  • 16March, 2020
  • 14October, 2017
  • 11September, 2017
  • 6February, 2018
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3255bam
  • 3056bigWig
  • 1723bed narrowPeak
  • 1591tsv
  • 1216fastq
  • 978bigBed narrowPeak
  • 382tagAlign
  • 270bed bed3+
  • 269bed broadPeak
  • 232bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3248Homo sapiens
Biosample type
  • 1900tissue
  • 573primary cell
  • 521cell line
  • 258in vitro differentiated cells
  • 3stem cell
Organ
  • 660pancreas
  • 618liver
  • 593connective tissue
  • 442adipose tissue
  • 291epithelium
  • 242brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 59blood
  • 59bodily fluid
  • 57musculature of body
  • 42nerve
  • 24embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3069AMP
  • 186T1D
Genome assembly (visualization)
  • 2885hg19
  • 2862GRCh38
Lab
  • 3050AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 85missing controlled_by
Audit category:
  • 42inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

3255 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans2726613861
liver11914721
bone tissue58
body of pancreas3524422
primary cell
monocyte845315
pancreatic ductal cell134410
pancreatic acinar cell84512
pancreatic beta cell10712
pancreatic alpha cell10612
cell line
HepG2299511
smooth muscle cell of the coronary artery6528
GM1287859
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
hepatocyte15
stem cell
hESC3
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