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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1202ChIP-seq
  • 1146total RNA-seq
  • 205DNase-seq
  • 158ATAC-seq
  • 79single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1243Transcription
  • 1202DNA binding
  • 368DNA accessibility
  • 18DNA methylation
Target of assay
  • 716histone modification
  • 715histone
  • 374narrow histone mark
  • 340broad histone mark
  • 256transcription factor
  • 230control
  • 77RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 572February, 2021
  • 283May, 2020
  • 277May, 2021
  • 250October, 2019
  • 219November, 2017
  • 218June, 2019
  • 139July, 2018
  • 132August, 2017
  • 120May, 2019
  • 82July, 2019
  • 79April, 2019
  • 59December, 2017
  • 59November, 2019
  • 59October, 2018
  • 49April, 2018
  • 49August, 2021
  • 37November, 2018
  • 31December, 2018
  • 25February, 2018
  • 24May, 2022
  • 18January, 2019
  • 16March, 2020
  • 11September, 2017
  • 8October, 2017
  • 6November, 2020
  • 5December, 2019
  • 2August, 2018
  • 2June, 2018
  • 1March, 2019
Available data
  • 2832bam
  • 2687bigWig
  • 1534bed narrowPeak
  • 1437tsv
  • 798bigBed narrowPeak
  • 796fastq
  • 387tagAlign
  • 305bed broadPeak
  • 275bigBed broadPeak
  • 259bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2831Homo sapiens
Biosample type
  • 1705tissue
  • 494primary cell
  • 356cell line
  • 274in vitro differentiated cells
  • 3stem cell
Organ
  • 561connective tissue
  • 471pancreas
  • 420liver
  • 415adipose tissue
  • 239epithelium
  • 238brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 44blood
  • 44bodily fluid
  • 42nerve
  • 32embryo
  • 20vein
  • 18spleen
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2646AMP
  • 186T1D
Genome assembly (visualization)
  • 2519hg19
  • 2483GRCh38
Lab
  • 2627AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 205inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 25missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

2832 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue3812
islet of Langerhans2417713861
liver7214711
bone tissue58
body of pancreas3324122
primary cell
monocyte845315
pancreatic alpha cell13311
pancreatic beta cell13310
endothelial cell of umbilical vein1721
skeletal muscle myoblast1411
cell line
HepG215411
smooth muscle cell of the coronary artery6528
EndoC_BH115331
GM1287844
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte514
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm18
stem cell
hESC3
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