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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1442ChIP-seq
  • 1282total RNA-seq
  • 207DNase-seq
  • 173ATAC-seq
  • 72single cell RNA-seq
  • 18small RNA-seq
  • 14WGBS
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1442DNA binding
  • 1372Transcription
  • 385DNA accessibility
  • 14DNA methylation
Target of assay
  • 728histone modification
  • 727histone
  • 427transcription factor
  • 378narrow histone mark
  • 348broad histone mark
  • 286control
  • 89recombinant protein
  • 68RNA binding protein
  • 16chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 370November, 2017
  • 283May, 2020
  • 277May, 2021
  • 272August, 2017
  • 250October, 2019
  • 218June, 2019
  • 153July, 2018
  • 120May, 2019
  • 82July, 2019
  • 79April, 2019
  • 72September, 2018
  • 64November, 2018
  • 59November, 2019
  • 55October, 2018
  • 49August, 2021
  • 42December, 2017
  • 39February, 2018
  • 32December, 2018
  • 28April, 2018
  • 24May, 2022
  • 18January, 2019
  • 16March, 2020
  • 14October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 2August, 2018
  • 2June, 2018
Available data
  • 3214bam
  • 3009bigWig
  • 1706bed narrowPeak
  • 1567tsv
  • 1171fastq
  • 954bigBed narrowPeak
  • 398tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 257bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 3207Homo sapiens
Biosample type
  • 1862tissue
  • 575primary cell
  • 534cell line
  • 243in vitro differentiated cells
Organ
  • 638pancreas
  • 620liver
  • 585connective tissue
  • 439adipose tissue
  • 272epithelium
  • 241brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 50blood
  • 50bodily fluid
  • 42nerve
  • 23embryo
  • 20vein
  • 18ureter
  • 17spleen
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3028AMP
  • 186T1D
Genome assembly (visualization)
  • 2844hg19
  • 2801GRCh38
Lab
  • 3010AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
Audit category:
  • 208inconsistent ontology term
  • 27inconsistent control
  • 1inconsistent replicate
Audit category:
  • 75missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

3214 results

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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
whole genome sequencing assay
tissue
adipose tissue2381
islet of Langerhans28266137
liver1211471
bone tissue58
heart left ventricle34332
primary cell
monocyte845315
pancreatic beta cell13107
pancreatic alpha cell13106
pancreatic acinar cell845
pancreatic ductal cell1344
cell line
HepG232151
smooth muscle cell of the coronary artery6528
GM1287850
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte4841
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm94
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