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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1501ChIP-seq
  • 1276total RNA-seq
  • 203DNase-seq
  • 152ATAC-seq
  • 105single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1501DNA binding
  • 1399Transcription
  • 360DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 429transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 288control
  • 91RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 382November, 2017
  • 283May, 2020
  • 280August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 163July, 2018
  • 120May, 2019
  • 90December, 2017
  • 82July, 2019
  • 79April, 2019
  • 73November, 2018
  • 72September, 2018
  • 59November, 2019
  • 56October, 2018
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 24January, 2019
  • 16March, 2020
  • 12October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2018
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3279bam
  • 3098bigWig
  • 1729bed narrowPeak
  • 1599tsv
  • 1206fastq
  • 975bigBed narrowPeak
  • 398tagAlign
  • 316bed broadPeak
  • 279bigBed broadPeak
  • 267bed bed3+
  • 155txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3272Homo sapiens
Biosample type
  • 1841tissue
  • 608primary cell
  • 536cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 663liver
  • 650pancreas
  • 581connective tissue
  • 430adipose tissue
  • 316epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 25blood
  • 25bodily fluid
  • 20vein
  • 18ureter
  • 15spleen
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3093AMP
  • 186T1D
Genome assembly (visualization)
  • 2909hg19
  • 2888GRCh38
Lab
  • 3098AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

3279 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026012061
liver12214711
bone tissue58
heart left ventricle343322
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310611
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2348511
smooth muscle cell of the coronary artery6528
EndoC_BH115331
GM1287825
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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