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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 1280total RNA-seq
  • 205DNase-seq
  • 167ATAC-seq
  • 70single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 1368Transcription
  • 377DNA accessibility
  • 18DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 279August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 151July, 2018
  • 120May, 2019
  • 94December, 2017
  • 83November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 26April, 2018
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 6November, 2020
  • 6September, 2017
  • 5December, 2019
  • 2August, 2018
  • 2June, 2018
  • 1March, 2019
Available data
  • 3342bam
  • 3109bigWig
  • 1805bed narrowPeak
  • 1562tsv
  • 1298fastq
  • 1030bigBed narrowPeak
  • 398tagAlign
  • 318bed broadPeak
  • 281bigBed broadPeak
  • 269bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3335Homo sapiens
Biosample type
  • 1895tissue
  • 582cell line
  • 571primary cell
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 681liver
  • 649pancreas
  • 591connective tissue
  • 441adipose tissue
  • 285epithelium
  • 242brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 23spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3156AMP
  • 186T1D
Genome assembly (visualization)
  • 2948hg19
  • 2909GRCh38
Lab
  • 3137AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina NextSeq 500
BIOSAMPLE
ASSAY

3342 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans302641381
liver12214721
bone tissue58
body of pancreas3523422
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
primary cell
monocyte845315
pancreatic beta cell131048
pancreatic alpha cell131038
pancreatic ductal cell13446
pancreatic acinar cell8438
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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