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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136ChIP-seq
  • 34single cell RNA-seq
  • 4WGBS
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 136DNA binding
  • 34Transcription
  • 4DNA accessibility
  • 4DNA methylation
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 52December, 2017
  • 23November, 2018
  • 22November, 2017
  • 21April, 2018
  • 21October, 2018
  • 12January, 2019
  • 11July, 2018
  • 10August, 2017
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 178Homo sapiens
Biosample type
  • 48cell line
  • 48in vitro differentiated cells
  • 45tissue
  • 34primary cell
  • 3stem cell
Organ
  • 61liver
  • 51pancreas
  • 45epithelium
  • 13embryo
  • 10blood
  • 10bodily fluid
  • 8connective tissue
  • 7spleen
  • 3adipose tissue
  • 2brain
Project
  • 178AMP
Genome assembly (visualization)
  • 158GRCh38
  • 154hg19
Lab
  • 177AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

178 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
cell line
HepG238
GM1287810
in vitro differentiated cells
hepatocyte15
pancreatic endoderm9
Posterior foregut5
adipocyte5
definitive endodermal cell5
tissue
body of pancreas20
spleen7
right lobe of liver6
islet of Langerhans21
adipose tissue2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
mesenchymal cell4
stem cell
hESC3
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