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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1445ChIP-seq
  • 1261total RNA-seq
  • 209DNase-seq
  • 149ATAC-seq
  • 80single cell RNA-seq
  • 18small RNA-seq
  • 15WGBS
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1445DNA binding
  • 1359Transcription
  • 363DNA accessibility
  • 15DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 405narrow histone mark
  • 381transcription factor
  • 378broad histone mark
  • 280control
  • 89recombinant protein
  • 85RNA binding protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 353November, 2017
  • 283May, 2020
  • 277May, 2021
  • 271August, 2017
  • 250October, 2019
  • 218June, 2019
  • 156July, 2018
  • 120May, 2019
  • 90December, 2017
  • 82July, 2019
  • 79April, 2019
  • 72September, 2018
  • 70November, 2018
  • 59November, 2019
  • 49August, 2021
  • 49October, 2018
  • 32April, 2018
  • 24February, 2018
  • 22January, 2019
  • 16March, 2020
  • 11September, 2017
  • 9October, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 2December, 2018
  • 2June, 2018
  • 1March, 2019
Available data
  • 3183bam
  • 3010bigWig
  • 1691bed narrowPeak
  • 1553tsv
  • 1125fastq
  • 940bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 155txt
  • 151zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3176Homo sapiens
Biosample type
  • 1827tissue
  • 583primary cell
  • 494cell line
  • 276in vitro differentiated cells
  • 3stem cell
Organ
  • 633liver
  • 629pancreas
  • 568connective tissue
  • 417adipose tissue
  • 299epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 42nerve
  • 32embryo
  • 20vein
  • 18ureter
  • 16spleen
  • 15blood
  • 15bodily fluid
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2997AMP
  • 186T1D
Genome assembly (visualization)
  • 2824hg19
  • 2800GRCh38
Lab
  • 3002AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 81missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 100
BIOSAMPLE
ASSAY

3183 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue2381
islet of Langerhans3026012061
liver12214721
bone tissue58
heart left ventricle343322
primary cell
monocyte845315
pancreatic beta cell131078
pancreatic alpha cell131068
pancreatic acinar cell84511
pancreatic ductal cell13447
cell line
HepG2316511
smooth muscle cell of the coronary artery6528
EndoC_BH115331
GM1287815
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm18
stem cell
hESC3
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