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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1568ChIP-seq
  • 1159total RNA-seq
  • 208DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1568DNA binding
  • 1283Transcription
  • 388DNA accessibility
  • 17DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 475transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 306control
  • 102RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 390November, 2017
  • 283May, 2020
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 189August, 2017
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 82July, 2019
  • 82November, 2018
  • 79April, 2019
  • 74October, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 46September, 2018
  • 33December, 2018
  • 33February, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3257bam
  • 3034bigWig
  • 1809bed narrowPeak
  • 1477tsv
  • 1147fastq
  • 1034bigBed narrowPeak
  • 398tagAlign
  • 321bed broadPeak
  • 284bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 112zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3250Homo sapiens
Biosample type
  • 1814tissue
  • 580primary cell
  • 575cell line
  • 285in vitro differentiated cells
  • 3stem cell
Organ
  • 678liver
  • 590connective tissue
  • 571pancreas
  • 439adipose tissue
  • 289epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 56blood
  • 56bodily fluid
  • 42nerve
  • 35embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3071AMP
  • 186T1D
Genome assembly (visualization)
  • 2864hg19
  • 2825GRCh38
Lab
  • 3052AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 85missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 101
BIOSAMPLE
ASSAY

3257 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
liver12214721
islet of Langerhans3017713861
bone tissue58
body of pancreas3524422
primary cell
monocyte845315
pancreatic beta cell13712
pancreatic alpha cell13612
pancreatic ductal cell13410
pancreatic acinar cell8512
cell line
HepG2356511
smooth muscle cell of the coronary artery6528
GM1287856
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm183
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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