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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1331ChIP-seq
  • 1282total RNA-seq
  • 198DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 1331DNA binding
  • 378DNA accessibility
  • 18DNA methylation
Target of assay
  • 691histone modification
  • 690histone
  • 386transcription factor
  • 359narrow histone mark
  • 330broad histone mark
  • 252control
  • 89recombinant protein
  • 81RNA binding protein
  • 19chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 572February, 2021
  • 283May, 2020
  • 279November, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 216August, 2017
  • 164July, 2018
  • 120May, 2019
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 71November, 2018
  • 68December, 2017
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 34December, 2018
  • 29January, 2019
  • 24May, 2022
  • 17February, 2018
  • 16March, 2020
  • 7October, 2017
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3134bam
  • 2954bigWig
  • 1617bed narrowPeak
  • 1601tsv
  • 1094fastq
  • 894bigBed narrowPeak
  • 359tagAlign
  • 237bed bed3+
  • 229bed broadPeak
  • 201bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 3134Homo sapiens
Biosample type
  • 1854tissue
  • 562primary cell
  • 470cell line
  • 247in vitro differentiated cells
  • 1stem cell
Organ
  • 637pancreas
  • 589connective tissue
  • 561liver
  • 439adipose tissue
  • 286epithelium
  • 224brain
  • 211heart
  • 179vasculature
  • 177blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 59blood
  • 59bodily fluid
  • 57musculature of body
  • 42nerve
  • 23spleen
  • 20vein
  • 18embryo
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2948AMP
  • 186T1D
Genome assembly (visualization)
  • 2776hg19
  • 2769GRCh38
Lab
  • 2929AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 209inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

3134 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue3812
islet of Langerhans1226613861
liver1161471
bone tissue58
body of pancreas3522422
primary cell
monocyte845315
pancreatic beta cell210712
pancreatic ductal cell134410
pancreatic alpha cell210612
pancreatic acinar cell84512
cell line
HepG2248511
smooth muscle cell of the coronary artery6528
GM1287859
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte534
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
hepatocyte15
stem cell
hESC1
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