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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1450ChIP-seq
  • 1277total RNA-seq
  • 209DNase-seq
  • 165ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 4FAIRE-seq
  • 1pCHi-C
Assay category
  • 1450DNA binding
  • 1401Transcription
  • 378DNA accessibility
  • 18DNA methylation
Target of assay
  • 770histone modification
  • 769histone
  • 410transcription factor
  • 402narrow histone mark
  • 366broad histone mark
  • 268control
  • 102RNA binding protein
  • 77recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 339November, 2017
  • 283May, 2020
  • 277May, 2021
  • 261August, 2017
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 82July, 2019
  • 82November, 2018
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 46December, 2017
  • 39February, 2018
  • 34December, 2018
  • 24May, 2022
  • 20January, 2019
  • 16March, 2020
  • 14October, 2017
  • 6November, 2020
  • 6September, 2017
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
Available data
  • 3248bam
  • 3059bigWig
  • 1725bed narrowPeak
  • 1596tsv
  • 1192fastq
  • 966bigBed narrowPeak
  • 398tagAlign
  • 317bed broadPeak
  • 281bigBed broadPeak
  • 263bed bed3+
  • 161txt
  • 113zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 3241Homo sapiens
Biosample type
  • 1850tissue
  • 601primary cell
  • 519cell line
  • 277in vitro differentiated cells
  • 1stem cell
Organ
  • 673pancreas
  • 588connective tissue
  • 577liver
  • 440adipose tissue
  • 308epithelium
  • 242brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 55blood
  • 55bodily fluid
  • 42nerve
  • 31embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3062AMP
  • 186T1D
Genome assembly (visualization)
  • 2894hg19
  • 2860GRCh38
Lab
  • 3044AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
Audit category:
  • 211inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 37inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

3248 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans2826613761
liver7614721
bone tissue58
body of pancreas3524422
primary cell
monocyte845315
pancreatic beta cell1310412
pancreatic alpha cell1310312
pancreatic ductal cell134410
pancreatic acinar cell84312
cell line
HepG230611
smooth muscle cell of the coronary artery6528
GM1287855
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5041
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm144
stem cell
hESC1
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