Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1385ChIP-seq
  • 1282total RNA-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 1385DNA binding
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 719histone modification
  • 718histone
  • 380transcription factor
  • 376narrow histone mark
  • 341broad histone mark
  • 284control
  • 91RNA binding protein
  • 25chromatin remodeller
  • 19recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 572February, 2021
  • 321November, 2017
  • 283May, 2020
  • 277May, 2021
  • 250August, 2017
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 82July, 2019
  • 79April, 2019
  • 73December, 2017
  • 72September, 2018
  • 61November, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 47October, 2018
  • 39February, 2018
  • 32December, 2018
  • 24May, 2022
  • 18January, 2019
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3199bam
  • 2989bigWig
  • 1647bed narrowPeak
  • 1600tsv
  • 1155fastq
  • 902bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3192Homo sapiens
Biosample type
  • 1859tissue
  • 608primary cell
  • 484cell line
  • 245in vitro differentiated cells
  • 3stem cell
Organ
  • 669pancreas
  • 572liver
  • 553connective tissue
  • 433adipose tissue
  • 302epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 50blood
  • 50bodily fluid
  • 42nerve
  • 36embryo
  • 20vein
  • 18ureter
  • 11spleen
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3013AMP
  • 186T1D
Genome assembly (visualization)
  • 2831hg19
  • 2789GRCh38
Lab
  • 2994AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 27inconsistent control
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

3199 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026613861
liver12214721
bone tissue58
heart left ventricle343322
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2271511
smooth muscle cell of the coronary artery6528
GM1287850
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
neural progenitor cell20710
adipocyte2241
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego