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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • 26ATAC-seq
  • 26single cell RNA-seq
  • 21total RNA-seq
  • 3WGBS
Assay category
  • 133DNA binding
  • 47Transcription
  • 26DNA accessibility
  • 3DNA methylation
Target of assay
  • 104transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 24May, 2022
  • 17April, 2018
  • 17November, 2018
  • 15February, 2018
  • 11August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
Available data
  • 233fastq
  • 209bam
  • 159bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 47tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 209Homo sapiens
Biosample type
  • 88cell line
  • 80tissue
  • 26primary cell
  • 15in vitro differentiated cells
Organ
  • 60pancreas
  • 48liver
  • 45blood
  • 45bodily fluid
  • 25adipose tissue
  • 25connective tissue
  • 18epithelium
  • 8spleen
  • 4embryo
Project
  • 209AMP
Genome assembly (visualization)
  • 174hg19
  • 159GRCh38
Lab
  • 185AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
BIOSAMPLE
ASSAY

209 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
cell line
GM1287845
HepG243
tissue
islet of Langerhans186
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
mesenchymal cell4
pancreatic alpha cell4
pancreatic beta cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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