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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 247ChIP-seq
  • 11DNase-seq
Assay category
  • 247DNA binding
  • 11DNA accessibility
Target of assay
  • 99transcription factor
  • 94histone
  • 94histone modification
  • 54control
  • 48broad histone mark
  • 46narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 113November, 2017
  • 66August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 8October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 251Homo sapiens
Biosample type
  • 112cell line
  • 53tissue
  • 47primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 120liver
  • 52pancreas
  • 31epithelium
  • 19brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 258AMP
Genome assembly (visualization)
  • 222hg19
  • 190GRCh38
Lab
  • 258AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

258 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2111
GM128781
tissue
islet of Langerhans18
brain82
pancreas10
liver62
adipose tissue2
primary cell
skeletal muscle myoblast151
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
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