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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
  • 10ATAC-seq
  • 5total RNA-seq
  • 1FAIRE-seq
Assay category
  • 128DNA binding
  • 11DNA accessibility
  • 5Transcription
Target of assay
  • 75transcription factor
  • 38control
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 48December, 2017
  • 21August, 2017
  • 10January, 2019
  • 5November, 2018
  • 5September, 2017
  • 1March, 2019
  • 1October, 2017
Available data
  • 166fastq
  • 144bam
  • 110bigWig
  • 92bed narrowPeak
  • 76bigBed narrowPeak
  • 40zippedFastqFolder
  • 11bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 144Homo sapiens
Biosample type
  • 63cell line
  • 57tissue
  • 14in vitro differentiated cells
  • 8primary cell
  • 2stem cell
Organ
  • 104liver
  • 16pancreas
  • 9epithelium
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 5embryo
  • 2adipose tissue
  • 1brain
Project
  • 144AMP
Genome assembly (visualization)
  • 104hg19
  • 99GRCh38
Lab
  • 143AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 19inconsistent control read length
BIOSAMPLE
ASSAY

144 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
FAIRE-seq
cell line
HepG2535
GM128785
tissue
liver46
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
in vitro differentiated cells
pancreatic endoderm4
adipocyte3
Posterior foregut2
definitive endodermal cell2
primitive gut cell2
primary cell
pancreatic alpha cell3
pancreatic beta cell3
pancreatic acinar cell2
stem cell
hESC2
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