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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1415ChIP-seq
  • 1152total RNA-seq
  • 199DNase-seq
  • 126ATAC-seq
  • 90single cell RNA-seq
  • 18small RNA-seq
  • 13WGBS
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1415DNA binding
  • 1260Transcription
  • 330DNA accessibility
  • 13DNA methylation
Target of assay
  • 775histone
  • 775histone modification
  • 399narrow histone mark
  • 376transcription factor
  • 375broad histone mark
  • 265control
  • 89recombinant protein
  • 82RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 572February, 2021
  • 348November, 2017
  • 283May, 2020
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 172August, 2017
  • 155July, 2018
  • 120May, 2019
  • 90December, 2017
  • 82July, 2019
  • 79April, 2019
  • 59November, 2019
  • 49August, 2021
  • 48November, 2018
  • 42April, 2018
  • 39February, 2018
  • 39October, 2018
  • 32September, 2018
  • 17January, 2019
  • 16March, 2020
  • 9October, 2017
  • 6November, 2020
  • 6September, 2017
  • 5December, 2019
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 3019bam
  • 2851bigWig
  • 1637bed narrowPeak
  • 1454tsv
  • 903fastq
  • 895bigBed narrowPeak
  • 398tagAlign
  • 310bed broadPeak
  • 275bigBed broadPeak
  • 265bed bed3+
  • 155txt
  • 64xls
  • 31bed bedMethyl
  • 31bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 18zippedFastqFolder
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3012Homo sapiens
Biosample type
  • 1706tissue
  • 541primary cell
  • 479cell line
  • 290in vitro differentiated cells
  • 3stem cell
Organ
  • 602liver
  • 567connective tissue
  • 491pancreas
  • 417adipose tissue
  • 256epithelium
  • 242brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 20vein
  • 18ureter
  • 15blood
  • 15bodily fluid
  • 8skeleton
  • 7eye
  • 7spleen
  • 1pericardium
  • 1pituitary gland
Project
  • 2833AMP
  • 186T1D
Genome assembly (visualization)
  • 2678hg19
  • 2655GRCh38
Lab
  • 2839AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 81missing controlled_by
Audit category:
  • 48inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

3019 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
liver1091471
islet of Langerhans3016911961
bone tissue58
heart left ventricle343322
primary cell
monocyte845315
pancreatic beta cell1310
pancreatic endocrine cell23
pancreatic alpha cell139
pancreatic ductal cell138
cell line
HepG23071
smooth muscle cell of the coronary artery6528
EndoC_BH115331
GM1287815
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte534
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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