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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1267total RNA-seq
  • 884ChIP-seq
  • 206DNase-seq
  • 174ATAC-seq
  • 23single cell RNA-seq
  • 18small RNA-seq
  • 14WGBS
  • 3FAIRE-seq
  • 1pCHi-C
Assay category
  • 1308Transcription
  • 884DNA binding
  • 383DNA accessibility
  • 14DNA methylation
Target of assay
  • 564histone modification
  • 563histone
  • 299narrow histone mark
  • 264broad histone mark
  • 179control
  • 141transcription factor
  • 35RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 572February, 2021
  • 283May, 2020
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 122July, 2018
  • 120May, 2019
  • 112November, 2017
  • 109August, 2017
  • 82July, 2019
  • 79April, 2019
  • 59November, 2019
  • 53October, 2018
  • 49August, 2021
  • 40September, 2018
  • 39November, 2018
  • 32December, 2018
  • 24May, 2022
  • 16March, 2020
  • 13January, 2019
  • 12April, 2018
  • 6November, 2020
  • 6October, 2017
  • 5December, 2019
  • 5September, 2017
  • 4December, 2017
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 2590bam
  • 2477bigWig
  • 1502tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 450fastq
  • 359tagAlign
  • 234bed broadPeak
  • 222bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 2590Homo sapiens
Biosample type
  • 1738tissue
  • 437primary cell
  • 259cell line
  • 156in vitro differentiated cells
Organ
  • 520connective tissue
  • 485pancreas
  • 425adipose tissue
  • 298liver
  • 224brain
  • 211heart
  • 189epithelium
  • 179vasculature
  • 177blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 45blood
  • 45bodily fluid
  • 42nerve
  • 20vein
  • 18ureter
  • 17spleen
  • 10embryo
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2404AMP
  • 186T1D
Genome assembly (visualization)
  • 2320GRCh38
  • 2311hg19
Lab
  • 2385AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 201inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

2590 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue381
islet of Langerhans266238
liver1476821
bone tissue58
heart left ventricle334322
primary cell
monocyte538415
endothelial cell of umbilical vein1721
pancreatic beta cell1072
pancreatic alpha cell1062
pancreatic acinar cell455
cell line
smooth muscle cell of the coronary artery5268
HepG255111
EndoC_BH133151
GM1287845
Panc1131
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell72010
cardiac precursors (cardiac muscle cell)191
induced pluripotent stem cell9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
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