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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 163ChIP-seq
  • 130total RNA-seq
  • 49ATAC-seq
  • 16single cell RNA-seq
  • 10DNase-seq
  • 5WGBS
Assay category
  • 163DNA binding
  • 146Transcription
  • 59DNA accessibility
  • 5DNA methylation
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 110August, 2017
  • 44November, 2017
  • 40September, 2018
  • 39November, 2018
  • 37October, 2018
  • 32December, 2018
  • 24May, 2022
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 6October, 2017
  • 5September, 2017
  • 4December, 2017
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 455fastq
  • 373bam
  • 318bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 373Homo sapiens
Biosample type
  • 201tissue
  • 103cell line
  • 68primary cell
  • 1in vitro differentiated cells
Organ
  • 198pancreas
  • 79liver
  • 61epithelium
  • 45blood
  • 45bodily fluid
  • 26connective tissue
  • 25adipose tissue
  • 17spleen
  • 1brain
Project
  • 373AMP
Genome assembly (visualization)
  • 320hg19
  • 304GRCh38
Lab
  • 348AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

373 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
tissue
islet of Langerhans9719
body of pancreas13422
spleen13112
liver132
subcutaneous adipose tissue121
cell line
HepG25251
GM1287845
primary cell
pancreatic alpha cell1063
pancreatic beta cell1072
pancreatic acinar cell452
pancreatic ductal cell442
pancreatic cell3
in vitro differentiated cells
adipocyte1
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