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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 694ChIP-seq
  • 83single cell RNA-seq
  • 15total RNA-seq
  • 4WGBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 694DNA binding
  • 98Transcription
  • 6DNA accessibility
  • 4DNA methylation
Target of assay
  • 344transcription factor
  • 221histone
  • 221histone modification
  • 127control
  • 114broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 280November, 2017
  • 173August, 2017
  • 90December, 2017
  • 48November, 2018
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 32September, 2018
  • 23October, 2018
  • 17January, 2019
  • 9October, 2017
  • 6September, 2017
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 795Homo sapiens
Biosample type
  • 323cell line
  • 172primary cell
  • 169tissue
  • 135in vitro differentiated cells
  • 3stem cell
Organ
  • 383liver
  • 204pancreas
  • 128epithelium
  • 73connective tissue
  • 26embryo
  • 19brain
  • 17adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
Project
  • 802AMP
Genome assembly (visualization)
  • 687hg19
  • 639GRCh38
Lab
  • 802AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 82missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

802 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2308
GM1287815
primary cell
pancreatic alpha cell1310
pancreatic beta cell1310
pancreatic endocrine cell23
pancreatic ductal cell137
skeletal muscle myoblast151
tissue
liver54
islet of Langerhans28611
body of pancreas20
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm184
hepatocyte15
definitive endodermal cell82
primitive gut cell82
stem cell
hESC3
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