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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
132
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
346
November, 2017
283
May, 2020
233
August, 2017
233
May, 2021
210
June, 2019
195
October, 2019
164
July, 2018
87
November, 2018
82
July, 2019
79
December, 2017
62
May, 2019
57
October, 2018
55
September, 2018
53
November, 2019
49
April, 2018
42
April, 2019
42
August, 2021
34
December, 2018
31
February, 2018
26
January, 2019
24
May, 2022
16
March, 2020
11
September, 2017
10
October, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
238
fastq
233
bam
211
bigWig
89
tsv
86
bed narrowPeak
40
tagAlign
27
bed bed3+
24
bigBed narrowPeak
19
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
230
Homo sapiens
Biosample type
149
tissue
42
in vitro differentiated cells
42
primary cell
Organ
144
pancreas
59
connective tissue
23
epithelium
19
liver
17
adipose tissue
Project
233
AMP
Genome assembly (visualization)
203
hg19
200
GRCh38
Lab
233
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
16
89
1
1
liver
18
white adipose tissue
12
pancreas
6
adipose tissue
2
2
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in vitro differentiated cells
adipocyte
41
1
primary cell
pancreatic alpha cell
10
1
pancreatic beta cell
10
1
skeletal muscle myoblast
9
2
pancreatic endocrine cell
8
pancreatic acinar cell
1
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