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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
31
ChIP-seq
8
ATAC-seq
4
total RNA-seq
1
WGBS
Assay category
44
DNA accessibility
31
DNA binding
4
Transcription
1
DNA methylation
Target of assay
48
histone
48
histone modification
broad histone mark
17
control
14
narrow histone mark
Date released
38
October, 2019
32
June, 2019
6
February, 2021
3
May, 2019
1
July, 2019
Available data
80
bam
58
bed narrowPeak
57
bigWig
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
80
Homo sapiens
Biosample type
80
tissue
Organ
652
liver
619
pancreas
577
connective tissue
442
adipose tissue
273
epithelium
182
brain
174
heart
140
vasculature
135
blood vessel
129
kidney
88
artery
80
limb
66
bone element
60
blood
60
bodily fluid
49
musculature of body
32
embryo
26
nerve
20
spleen
18
ureter
11
vein
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
80
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
2
19
1
4
muscle of arm
17
muscle of leg
13
3
1
tibial artery
2
9
1
distal epiphysis of femur
1
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