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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1397ChIP-seq
  • 1193total RNA-seq
  • 205DNase-seq
  • 170ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 16WGBS
  • 4FAIRE-seq
  • 1pCHi-C
Assay category
  • 1397DNA binding
  • 1317Transcription
  • 379DNA accessibility
  • 16DNA methylation
Target of assay
  • 682histone
  • 682histone modification
  • 438transcription factor
  • 353narrow histone mark
  • 329broad histone mark
  • 275control
  • 95RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 87November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3110bam
  • 2897bigWig
  • 1675bed narrowPeak
  • 1511tsv
  • 1071fastq
  • 1000bigBed narrowPeak
  • 313tagAlign
  • 281bed broadPeak
  • 270bigBed broadPeak
  • 240bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3110Homo sapiens
Biosample type
  • 1737tissue
  • 582cell line
  • 551primary cell
  • 237in vitro differentiated cells
  • 3stem cell
Organ
  • 655liver
  • 522connective tissue
  • 521pancreas
  • 425adipose tissue
  • 288epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2924AMP
  • 186T1D
Genome assembly (visualization)
  • 2746hg19
  • 2710GRCh38
Lab
  • 2905AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 49missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

3110 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue381
liver9714721
islet of Langerhans8177386
bone tissue58
body of pancreas3524422
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
primary cell
monocyte845315
pancreatic ductal cell134410
pancreatic acinar cell84412
pancreatic beta cell10612
pancreatic alpha cell10512
in vitro differentiated cells
cardiomyocytes359
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
hepatocyte15
stem cell
hESC3
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