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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
447
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
447
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
293
transcription factor
88
control
82
recombinant protein
63
histone modification
62
histone
53
RNA binding protein
43
narrow histone mark
20
chromatin remodeller
19
broad histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
618
bam
572
bigWig
402
fastq
391
bed narrowPeak
308
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
618
Homo sapiens
Biosample type
366
cell line
240
tissue
12
primary cell
Organ
689
pancreas
618
liver
593
connective tissue
442
adipose tissue
298
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
24
spleen
23
embryo
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
618
AMP
Genome assembly (visualization)
535
hg19
481
GRCh38
Lab
618
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2017
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
618 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
84
147
2
1
right lobe of liver
2
1
1
2
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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