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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1484ChIP-seq
  • 1282total RNA-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1484DNA binding
  • 1406Transcription
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 754histone modification
  • 753histone
  • 443transcription factor
  • 389narrow histone mark
  • 363broad histone mark
  • 285control
  • 99RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • December, 2017
  • 87November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3298bam
  • 3097bigWig
  • 1745bed narrowPeak
  • 1600tsv
  • 1264fastq
  • 992bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 258bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3291Homo sapiens
Biosample type
  • 1859tissue
  • 609primary cell
  • 582cell line
  • 248in vitro differentiated cells
Organ
  • 689pancreas
  • 618liver
  • 593connective tissue
  • 442adipose tissue
  • 298epithelium
  • 243brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 24spleen
  • 23embryo
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3112AMP
  • 186T1D
Genome assembly (visualization)
  • 2921hg19
  • 2882GRCh38
Lab
  • 3093AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 208inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 87missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • December, 2017
BIOSAMPLE
ASSAY

3298 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026613861
liver8414721
bone tissue58
body of pancreas3524422
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm94
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