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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1578ChIP-seq
  • 1238total RNA-seq
  • 209DNase-seq
  • 169ATAC-seq
  • 103single cell RNA-seq
  • 9WGBS
  • 3FAIRE-seq
  • 1pCHi-C
Assay category
  • 1578DNA binding
  • 1341Transcription
  • 381DNA accessibility
  • 9DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 485transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 303control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 87November, 2018
  • July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3310bam
  • 3084bigWig
  • 1810bed narrowPeak
  • 1535tsv
  • 1358fastq
  • 1040bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 23bedpe bed3+
  • 23hic
  • 13bed bedMethyl
  • 13bigBed bedMethyl
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3303Homo sapiens
Biosample type
  • 1843tissue
  • 591primary cell
  • 582cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 685pancreas
  • 674liver
  • 577connective tissue
  • 430adipose tissue
  • 312epithelium
  • 230brain
  • 190heart
  • 176vasculature
  • 171blood vessel
  • 137kidney
  • 113limb
  • 99artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 52musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pituitary gland
Project
  • 3124AMP
  • 186T1D
Genome assembly (visualization)
  • 2926hg19
  • 2880GRCh38
Lab
  • 3105AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

3310 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026613861
liver1221452
bone tissue58
body of pancreas35442
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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