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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1487ChIP-seq
  • 1109total RNA-seq
  • 209DNase-seq
  • 162ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1487DNA binding
  • 1233Transcription
  • 376DNA accessibility
  • 18DNA methylation
Target of assay
  • 699histone modification
  • 698histone
  • 481transcription factor
  • 363narrow histone mark
  • 334broad histone mark
  • 305control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 87November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3115bam
  • 2866bigWig
  • 1684bed narrowPeak
  • 1427tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 308tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3108Homo sapiens
Biosample type
  • 1869tissue
  • 577cell line
  • 460primary cell
  • 206in vitro differentiated cells
  • 3stem cell
Organ
  • 681liver
  • 645pancreas
  • 592connective tissue
  • 442adipose tissue
  • 307epithelium
  • 243brain
  • 208heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 34embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3065AMP
  • 50T1D
Genome assembly (visualization)
  • 2722hg19
  • 2683GRCh38
Lab
  • 3045AMP-T2D consortium
  • 69Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 139inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 88missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

3115 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3023013861
liver12214721
bone tissue58
body of pancreas3524422
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH114291
Panc1131
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
hepatocyte15
stem cell
hESC3
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