Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1282total RNA-seq
  • 1186ChIP-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 1186DNA binding
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 710histone modification
  • 709histone
  • 376narrow histone mark
  • 332broad histone mark
  • 242transcription factor
  • 235control
  • 66RNA binding protein
  • 23recombinant protein
  • 21chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 572February, 2021
  • November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 87November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3000bam
  • 2835bigWig
  • 1600tsv
  • 1504bed narrowPeak
  • 1034fastq
  • 730bigBed narrowPeak
  • 320tagAlign
  • 273bed bed3+
  • 252bed broadPeak
  • 221bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 2993Homo sapiens
Biosample type
  • 1838tissue
  • 600primary cell
  • 291in vitro differentiated cells
  • 268cell line
  • 3stem cell
Organ
  • 689pancreas
  • 593connective tissue
  • 442adipose tissue
  • 367liver
  • 311epithelium
  • 211heart
  • 179vasculature
  • 177blood vessel
  • 165brain
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 57musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2814AMP
  • 186T1D
Genome assembly (visualization)
  • 2718hg19
  • 2679GRCh38
Lab
  • 2795AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 78missing controlled_by
Audit category:
  • 35inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

3000 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue38122
islet of Langerhans2663013861
liver14712221
bone tissue58
body of pancreas2354422
primary cell
monocyte538415
pancreatic beta cell1013712
pancreatic alpha cell1013612
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes593
adipocyte4531
neural progenitor cell72010
pancreatic endoderm418
cardiac precursors (cardiac muscle cell)191
cell line
smooth muscle cell of the coronary artery5268
GM1287860
HepG254511
EndoC_BH133151
Panc1131
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego