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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
241
DNA binding
33
DNA accessibility
12
Transcription
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
42
transcription factor
33
control
11
RNA binding protein
8
chromatin remodeller
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
27
December, 2018
18
January, 2019
November, 2018
13
July, 2019
9
October, 2017
Available data
286
bam
263
bigWig
243
bed narrowPeak
167
bigBed narrowPeak
118
tagAlign
64
fastq
45
bed broadPeak
36
bigBed broadPeak
33
bed bed3+
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
286
Homo sapiens
Biosample type
224
tissue
45
cell line
17
primary cell
Organ
682
pancreas
628
liver
592
connective tissue
441
adipose tissue
317
epithelium
241
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
57
musculature of body
45
blood
45
bodily fluid
42
nerve
embryo
20
vein
18
ureter
15
spleen
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
286
AMP
Genome assembly (visualization)
255
GRCh38
195
hg19
Lab
286
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
month_released!
November, 2018
organ_slims!
embryo
BIOSAMPLE
ASSAY
286 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
12
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
cell line
GM12878
45
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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