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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1508ChIP-seq
  • 1282total RNA-seq
  • 200DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 11WGBS
  • 4FAIRE-seq
  • 1pCHi-C
Assay category
  • 1508DNA binding
  • 1406Transcription
  • 379DNA accessibility
  • 11DNA methylation
Target of assay
  • 785histone modification
  • 784histone
  • 421transcription factor
  • 405narrow histone mark
  • 378broad histone mark
  • 300control
  • 82RNA binding protein
  • 73recombinant protein
  • 29chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 572February, 2021
  • 392November, 2017
  • 283May, 2020
  • 282August, 2017
  • 277May, 2021
  • 250October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • November, 2018
  • 82July, 2019
  • 79April, 2019
  • 76October, 2018
  • 72September, 2018
  • 59November, 2019
  • 49April, 2018
  • 49August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 11September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 3305bam
  • 3089bigWig
  • 1744bed narrowPeak
  • 1600tsv
  • 1270fastq
  • 969bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 264bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 29bed bedMethyl
  • 29bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 7csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3298Homo sapiens
Biosample type
  • 1881tissue
  • 609primary cell
  • 521cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 682pancreas
  • 628liver
  • 592connective tissue
  • 441adipose tissue
  • 317epithelium
  • 241brain
  • 211heart
  • 185vasculature
  • 180blood vessel
  • 144kidney
  • 114limb
  • 102artery
  • 66bone element
  • 57musculature of body
  • 45blood
  • 45bodily fluid
  • 42nerve
  • 36embryo
  • 20vein
  • 18ureter
  • 15spleen
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 3119AMP
  • 186T1D
Genome assembly (visualization)
  • 2927hg19
  • 2880GRCh38
Lab
  • 3100AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 212inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 85missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

3305 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue23812
islet of Langerhans3026613861
liver1181471
bone tissue58
body of pancreas352242
primary cell
monocyte845315
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG231451
smooth muscle cell of the coronary artery6528
EndoC_BH115331
GM1287845
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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