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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
180
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
50
transcription factor
49
broad histone mark
35
control
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
355
November, 2017
283
May, 2020
277
May, 2021
274
August, 2017
250
October, 2019
214
June, 2019
164
July, 2018
115
May, 2019
90
December, 2017
82
July, 2019
75
April, 2019
72
September, 2018
65
October, 2018
58
November, 2019
53
November, 2018
49
April, 2018
49
August, 2021
39
February, 2018
24
May, 2022
16
March, 2020
15
October, 2017
12
January, 2019
11
September, 2017
7
December, 2018
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
287
fastq
281
bam
267
bigWig
138
bed narrowPeak
89
tsv
85
tagAlign
43
bigBed narrowPeak
39
bed broadPeak
31
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
274
Homo sapiens
Biosample type
175
tissue
56
primary cell
50
in vitro differentiated cells
Organ
166
pancreas
67
connective tissue
29
epithelium
26
liver
25
blood
bodily fluid
17
adipose tissue
7
spleen
Project
281
AMP
Genome assembly (visualization)
247
hg19
245
GRCh38
Lab
281
AMP-T2D consortium
Audit category:
38
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
bodily fluid
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
20
89
1
1
liver
25
pancreas
14
white adipose tissue
12
spleen
7
+ See 3 more…
primary cell
skeletal muscle myoblast
13
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
49
1
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